R-Package “org” (version 2022.7.20) Published on CRAN

“org” is a system to help you organize projects. Most analyses have three (or more) main sections: code, results, and data, each with different requirements (version control/sharing/encryption). You provide folder locations and ‘org’ helps you take care of the details.

true
2022-07-21

Changes since last version

The R-package “org” (version 2022.7.20) has been published on CRAN. “org” is a part of the splverse, a set of R packages developed to help solve problems that frequently occur when performing infectious disease surveillance. A significant breaking change is that org::initialize_project now takes in env as an argument (the environment into which the functions will be sourced). It is now recommended to include env = .GlobalEnv into the function call.

org::initialize_project(
  env = .GlobalEnv,
  home = "/git/analyses/2019/analysis3/",
  results = "/dropbox/analyses_results/2019/analysis3/"
  raw = "/data/analyses/2019/analysis3/"
)

Concept

The concept behind org is fairly simple - most analyses have three main sections:

Yet each of these sections have extremely different requirements.

Code should:

Results should:

Data should:

Corrections

If you see mistakes or want to suggest changes, please create an issue on the source repository.

Reuse

Text and figures are licensed under Creative Commons Attribution CC BY 4.0. Source code is available at https://github.com/sykdomspulsen-org/sykdomspulsen-org.github.io, unless otherwise noted. The figures that have been reused from other sources don't fall under this license and can be recognized by a note in their caption: "Figure from ...".

Citation

For attribution, please cite this work as

White (2022, July 21). Sykdomspulsen: R-Package "org" (version 2022.7.20) Published on CRAN. Retrieved from https://docs.sykdomspulsen.no/posts/2022-07-21-org-version-2022-7-20-published-on-cran/

BibTeX citation

@misc{white2022r-package,
  author = {White, Richard Aubrey},
  title = {Sykdomspulsen: R-Package "org" (version 2022.7.20) Published on CRAN},
  url = {https://docs.sykdomspulsen.no/posts/2022-07-21-org-version-2022-7-20-published-on-cran/},
  year = {2022}
}